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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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544 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCF1
ENSSSCG00000001346
ENSG00000204574
ATP-binding cassette sub-family F member 1
Low tissue specificity
Detected in all
ABHD14A
ENSSSCG00000030229
ENSG00000248487
Protein ABHD14A precursor
Low tissue specificity
Detected in all
ABTB2
ENSSSCG00000013303
ENSG00000166016
Ankyrin repeat and BTB domain containing 2
Low tissue specificity
Detected in all
ACO1
ENSSSCG00000023807
ENSG00000122729
Aconitase 1
Tissue enhanced
Detected in all
adipose tissue:
59.8
ACOX2
ENSSSCG00000011477
ENSG00000168306
Acyl-CoA oxidase 2
Group enriched
Detected in all
choroid plexus:
37.1
kidney:
39.7
liver:
99.8
ACOX3
ENSSSCG00000008724
ENSG00000087008
Acyl-CoA oxidase 3, pristanoyl
Low tissue specificity
Detected in all
ADCY9
ENSSSCG00000007950
ENSG00000162104
Adenylate cyclase 9
Low tissue specificity
Detected in all
ADGRF3
ENSSSCG00000008570
ENSG00000173567
Adhesion G protein-coupled receptor F3
Low tissue specificity
Detected in many
ADI1
ENSSSCG00000029161
ENSG00000182551
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Tissue enhanced
Detected in all
male glands:
66.8
ADRM1
ENSSSCG00000038718
ENSG00000130706
Adhesion regulating molecule 1
Low tissue specificity
Detected in all
AEBP2
ENSSSCG00000000587
ENSG00000139154
AE binding protein 2
Low tissue specificity
Detected in all
AKT1S1
ENSSSCG00000003194
ENSG00000204673
AKT1 substrate 1
Low tissue specificity
Detected in all
ALDH2
ENSSSCG00000009889
ENSG00000111275
Aldehyde dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
liver:
117.1
ALDH3A2
ENSSSCG00000018041
ENSG00000072210
Aldehyde dehydrogenase 3 family member A2
Low tissue specificity
Detected in all
ALDH9A1
ENSSSCG00000006324
ENSG00000143149
Aldehyde dehydrogenase 9 family member A1
Tissue enhanced
Detected in all
liver:
69.0
ALKBH4
ENSSSCG00000029300
ENSG00000160993
AlkB homolog 4, lysine demethylase
Low tissue specificity
Detected in all
AMMECR1L
ENSSSCG00000028633
ENSG00000144233
AMMECR1 like
Low tissue specificity
Detected in all
ANXA2
ENSSSCG00000004578
ENSG00000182718
Annexin A2
Low tissue specificity
Detected in all
ANXA5
ENSSSCG00000009097
ENSG00000164111
Annexin A5
Low tissue specificity
Detected in all
AP2A2
ENSSSCG00000012836
ENSG00000183020
Adaptor related protein complex 2 alpha 2 subunit
Low tissue specificity
Detected in all
AP4M1
ENSSSCG00000034288
ENSG00000221838
Adaptor related protein complex 4 mu 1 subunit
Low tissue specificity
Detected in all
APRT
ENSSSCG00000002650
ENSG00000198931
Adenine phosphoribosyltransferase
Tissue enhanced
Detected in all
adrenal gland:
56.0
ARFGAP1
ENSSSCG00000032235
ENSG00000101199
ADP ribosylation factor GTPase activating protein 1
Low tissue specificity
Detected in all
ARFGAP3
ENSSSCG00000000037
ENSG00000242247
ADP ribosylation factor GTPase activating protein 3
Low tissue specificity
Detected in all
ARHGAP1
ENSSSCG00000013256
ENSG00000175220
Rho GTPase activating protein 1
Tissue enhanced
Detected in all
lens:
114.8
ARHGAP24
ENSSSCG00000009229
ENSG00000138639
Rho GTPase activating protein 24
Tissue enhanced
Detected in all
kidney:
44.3
lens:
48.2
pineal gland:
47.9
ARHGDIA
ENSSSCG00000034058
ENSG00000141522
Rho GDP-dissociation inhibitor 1
Low tissue specificity
Detected in all
ARHGEF10L
ENSSSCG00000003486
ENSG00000074964
Rho guanine nucleotide exchange factor 10 like
Low tissue specificity
Detected in all
ARMC5
ENSSSCG00000025245
ENSG00000140691
Armadillo repeat containing 5
Low tissue specificity
Detected in all
ASB6
ENSSSCG00000005679
ENSG00000148331
Ankyrin repeat and SOCS box protein 6
Low tissue specificity
Detected in all
ASPH
ENSSSCG00000025087
ENSG00000198363
Aspartate beta-hydroxylase
Tissue enhanced
Detected in all
male glands:
108.5
ATF1
ENSSSCG00000016138
ENSG00000123268
Activating transcription factor 1
Low tissue specificity
Detected in all
ATG4B
ENSSSCG00000032919
ENSG00000168397
Cysteine protease ATG4B
Low tissue specificity
Detected in all
ATN1
ENSSSCG00000025117
ENSG00000111676
Atrophin 1
Low tissue specificity
Detected in all
ATXN1L
ENSSSCG00000038917
ENSG00000224470
Ataxin 1 like
Low tissue specificity
Detected in all
AUP1
ENSSSCG00000008268
ENSG00000115307
AUP1, lipid droplet regulating VLDL assembly factor
Low tissue specificity
Detected in all
AURKC
ENSSSCG00000034174
ENSG00000105146
Aurora kinase C
Tissue enhanced
Detected in all
testis:
36.7
B3GNTL1
ENSSSCG00000027229
ENSG00000175711
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1
Tissue enhanced
Detected in all
lens:
68.0
B9D1
ENSSSCG00000039681
ENSG00000108641
B9 domain containing 1
Low tissue specificity
Detected in all
BAD
ENSSSCG00000013033
ENSG00000002330
BCL2 associated agonist of cell death
Low tissue specificity
Detected in all
BAG6
ENSSSCG00000001410
ENSG00000204463
Large proline-rich protein BAG6
Tissue enriched
Detected in all
testis:
145.7
BARX1
ENSSSCG00000008081
ENSG00000131668
BARX homeobox 1
Tissue enriched
Detected in some
cartilage:
70.4
BAX
ENSSSCG00000003144
ENSG00000087088
BCL2 associated X, apoptosis regulator
Low tissue specificity
Detected in all
BET1L
ENSSSCG00000014556
ENSG00000177951
Bet1 golgi vesicular membrane trafficking protein like
Low tissue specificity
Detected in all
BSDC1
ENSSSCG00000026392
ENSG00000160058
BSD domain containing 1
Low tissue specificity
Detected in all
BTBD6
ENSSSCG00000035555
ENSG00000184887
BTB domain containing 6
Tissue enhanced
Detected in all
lens:
63.4
skeletal muscle:
66.5
BYSL
ENSSSCG00000026752
ENSG00000112578
Bystin
Low tissue specificity
Detected in all
C16orf58
ENSSSCG00000007753
ENSG00000140688
Chromosome 16 open reading frame 58
Low tissue specificity
Detected in all
C1orf174
ENSSSCG00000031102
ENSG00000198912
UPF0688 protein C1orf174 homolog
Tissue enhanced
Detected in all
testis:
29.5
C1orf21
ENSSSCG00000015565
ENSG00000116667
Chromosome 1 open reading frame 21
Tissue enhanced
Detected in all
skeletal muscle:
122.4
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